EHDS Logical Information Models
0.1.0 - ci-build

EHDS Logical Information Models, published by Xt-EHR. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/Xt-EHR/xt-ehr-common/tree/main and changes regularly. See the Directory of published versions

Logical Model: Specimen model

Official URL: https://www.xt-ehr.eu/specifications/fhir/StructureDefinition/EHDSSpecimen Version: 0.1.0
Draft as of 2025-06-10 Computable Name: EHDSSpecimen

C.9 - EHDS refined base model for A sample to be used for Analysis

Usages:

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings (Differential)

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred

Differential View

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings (Differential)

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. EHDSSpecimen 0..* Base Specimen model
Instances of this logical model can be the target of a Reference
... identifier 1..* Identifier C.9.1 - Identifier
... typeOfSpecies 0..1 CodeableConcept C.9.2 - Type of species
Binding Description: (preferred): SNOMED CT
... material 0..1 CodeableConcept C.9.3 - Material
Binding Description: (preferred): SNOMED CT
... bodySite 0..1 CodeableConcept C.9.5 - Body Site
Binding Description: (preferred): SNOMED CT
... morphology 0..1 CodeableConcept C.9.6 - Morphology
Binding Description: (preferred): SNOMED CT
... sourceDevice 0..1 CodeableConcept C.9.7 - Source Device
Binding Description: (preferred): SNOMED CT, EMDN
... collectionProcedure 0..1 Reference(Procedure) C.9.8 - Collection procedure
... collectionProcedureMethod 0..1 CodeableConcept C.9.9 - Collection procedure method
Binding Description: (preferred): SNOMED CT
... receivedDate 0..1 dateTime C.9.10 - Received date
... subject 0..1 Reference(Patient model | Patient Animal model | Location model | Group model | Device model | Substance model) C.9.11 - Subject
... container 0..* Base C.9.12 - Container
.... specimenQuantity 0..1 Quantity C.9.12.1 - Specimen quantity
.... containerDevice 1..1 EHDSDevice C.9.12.2 - Container device

doco Documentation for this format

Terminology Bindings

PathConformanceValueSetURI
EHDSSpecimen.typeOfSpeciespreferred
EHDSSpecimen.materialpreferred
EHDSSpecimen.bodySitepreferred
EHDSSpecimen.morphologypreferred
EHDSSpecimen.sourceDevicepreferred
EHDSSpecimen.collectionProcedureMethodpreferred

 

Other representations of profile: CSV, Excel